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Same Probes Different Programs

So i have two programs that use multiple probes including star probes. Both program use MOSTLY same probes.
Problem i am having is i can't calibrate all the probes in one shift because they all have multiple angles and not enough time in my shift to do them.
So i calibrate probes for which ever program i am using on that particular day.
But now i have to use both programs. But if i calibrate probes in one program it gave weird results in other program and vice versa. How can i fix it?
Can i name them differently in each program or is there any other way ? Thank you in advance
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