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Changing alignment after pointcloud is created

Good morning guys,

I just scanned a part and aligned the 2 COPS using the point pairs method and then aligned COP3 by using a best fit to the model. The engineer would now like to see the colormap from specific features that I would have to probe. I know there has to be a way to create a separate alignment while still using the original pointcloud but I can't seem to figure out how to do this. Would somebody be able to point me in the right direction?

Thank you in advance.
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