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EOM_CompRepRepository.v1 Folder & Files -- File Mgmt Guidelines?

Some of my Apex models have tons of data contained in folders titled "EOM_CompRepRepository.v1". They may or may not be related to crashes? More than any other program, I'm now running into significant disk space issues. I'm moving old models to archive drives but it seems to me that some of the data in the above mentioned folders might be expendable?
 
Can anyone provide some explanations of Apex-generated files & folders and how we ought to approach file management? Especially for us solo engineering firms.