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Making 2 Part Programs into 1. One Graphic, One report

I have a top half part program, and a bottom half. Is there a way I can merge the two? I want to run the top half, program A, then input a comment to the operator for them to flip the part, touch off, then measure the bottom half. All using one graphic, one report, one model. I don't want the features measured on the bottom half, program B, to be in space. I want the features to be pulled from the same model used in program A. Then dimension all 500 items in one report.

Can an equate alignment work? I thought those were used if the part moves laterally in any direction. But in this case, I need to flip the part to measure the bottom half.

Any advice?