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Backlog in 2014

I have been running into problems using 2014 where it seems like I am getting a backlog of information being used when it shouldn't be. Example: I program a part, very straight forward alignment, A-top plane, B- Line, C-cylinder...theses are used for both manual and DCC alignment. Now I check the true position on several holes using legacy dimensioning and the numbers look good. I take said part of and put on part two, part number two's true position numbers have doubled, part three's position numbers have doubled from part two's, and so on and so fourth. Has anyone run into this occurrence? And if so, what have you done to fix it?Confused