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TP of cylinder not making sense

I have a cylinder I'm measuring, (should be a profile in my opinion), that I'm measuring the beginning, middle and end of with 7 points each. This is only 100° of a cylinder. 0.5" long. It is parallel in Z to my a plane. Anyway, my concern is that when I report out each circle constructed least square from the cylinder hits, They are showing a z value of around 0.002" and some change. When I report the cylinder itself it is showing only 0.001" in Z. I report these out in legacy and get the same as well. Why am I 0.001" off. I'd think that the cylinder would be a centroid location which would be an average of the 3 circles used to make the cylinder. Am I missing something?

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