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best analog scan

I am struggling with this particular feature and i am not entirely sure why. I had it scanned 3 times by linear open scans then combined them in a constructed feature set. I dimensioned that as a profile of a surface, but it was not working properly as it was not reflecting the changes made on the cnc machine. I am trying to find the best scan for the notch portion, but i was wanting some input on what the best option would be. the notch diameter is 1mm, so it is fairly small, which may contributing to my struggle.